Visualizing the Molecular World: 20 Years of Molecule of the Month

Two decades of transforming how we see, understand, and interact with the building blocks of life

2000-2020 240+ Features 600K+ Annual Users
Molecular Visualization

Transforming complex structures into accessible knowledge

A Window into the Molecular World

Imagine peering into the intricate machinery of a living cell, watching molecular machines perform their precise dances to sustain life. For twenty years, the Molecule of the Month series has provided precisely this view, transforming how students, educators, and researchers alike visualize and understand the molecular foundations of biology.

240+
Monthly Installments
20
Years of Discovery
600K+
Annual Users

The Structural Biology Revolution and an Educational Mission

2000: Series Launch

Molecule of the Month debuts as PDB archive contains ~11,000 structures 2

2000: Early Recognition

Featured as "NetWatch Hot Pick" by Science magazine 2

2005: Educational Integration

Becomes integral part of Science Olympiad protein modeling event

2010: Technological Advancement

Website redesign with interactive JSmol views

2015: PDB-101 Launch

Comprehensive education portal launched

2020: 20th Anniversary

Over 600,000 annual users accessing 240 features 2

PDB Archive Growth (2000-2020)

The Art and Science of Making Molecules Accessible

Visual Innovation

David S. Goodsell's signature nonphotorealistic rendering with flat, pastel colors and black outlines replaced confusing traditional imagery 1 2 .

Language Accessibility

Technical jargon minimized, complex concepts translated into natural language to serve audiences from middle school to research level 2 .

Structured Curriculum

Articles organized into biologically meaningful categories creating a comprehensive exploration path for structural biology 2 .

Category Examples Educational Focus
Protein Synthesis Ribosomes, tRNA Molecular machinery of gene expression
Enzymes Catalase, DNA Polymerase Biological catalysis and specificity
Health and Disease Hemoglobin, Antibodies Molecular basis of medicine
Biological Energy ATP Synthase, Chlorophyll Energy conversion processes
Communication Neurotransmitters, Hormones Cellular signaling mechanisms

Case Study: Citizen Science and the Foldit Experiment

"What if people with no formal experience in science could help to improve or even rewrite nature, simply by playing a game?" 7

Methodology: Gamifying Protein Folding

Researchers from the University of Washington created Foldit, an interactive computer game that allowed players to manipulate virtual protein structures based on spatial intuition rather than computational algorithms alone 7 .

Key Game Elements:
  • Hydrogen bond optimization
  • Hydrophobic interaction scoring
  • Clash avoidance mechanisms
  • Community collaboration features

Results: Unexpected Success from Nontraditional Problem-Solvers

Foldit players proved remarkably adept at protein design and structure prediction, often outperforming computational algorithms for challenging folding problems.

Foldit Player Achievements
Accomplishment Scientific Significance PDB Structures
56 novel designed proteins Demonstrated citizen scientists' capacity for biomolecular design 6mrr, 6nuk, 6msp, 6mrs
New protein fold discovery Revealed previously unknown stable protein configurations 6nuk
M-PMV protease structure solution Solved a structure that had eluded scientists for 10 years 3sqf
Diels-Alder enzyme optimization Increased catalytic activity more than 10-fold 3u0s

Educational Impact and Global Reach

64%
of PDB-101 page accesses 2
27K+
Annual views for hemoglobin
Global
Translation and exhibitions
240+
Curriculum resources
Most Popular Molecules (Annual Views)
Global Educational Integration

The series has become embedded in educational systems worldwide, forming an integral part of the protein modeling event at the Science Olympiad and appearing in countless classrooms from high school to graduate level 1 .

International Reach:
  • Japanese translation by Protein Data Bank Japan
  • International traveling exhibition "The Art of Science"
  • Recognition in textbook illustrations worldwide
  • Adoption by educational resources globally

Future Directions and Lasting Legacy

As the Molecule of the Month entered its third decade, it underwent a significant transition—2025 marked the passing of the creative torch from David S. Goodsell to Janet Iwasa, ensuring the series' continuation with fresh perspectives while maintaining its core mission 1 .

Visual Literacy

Equipping millions with the visual literacy needed to understand scientific challenges at a fundamental level.

Accessibility Bridge

Creating bridges between specialist knowledge and broader scientific community understanding.

"When we make science visible, we make it accessible to all."

References